No. words: 1023; after pruning: 997


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 1.9 (1,1:357)  349  0.00 0.00 0.28  BE591181Ld04P026G09P026C121F1_046.ab1        2   358 (167)  C BE591181Ld04P026G09P026C121R1_046.ab1   (142)   356     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  178 nodes

 91 str. conn. components

Path
    1  C BE591181Ld04P026G09P026C121R1_046.ab1   498 
  294    BE591181Ld04P026G09P026C121F1_046.ab1   153 
  362  C BE591181Ld04P026G09P026C121R1_046.ab1   137 
  378    BE591181Ld04P026G09P026C121F1_046.ab1   237 
  398  C BE591181Ld04P026G09P026C121R1_046.ab1   101 
  406    BE591181Ld04P026G09P026C121F1_046.ab1   265 
  418  C BE591181Ld04P026G09P026C121R1_046.ab1    81 
  438    BE591181Ld04P026G09P026C121F1_046.ab1   297 
Contig length: old 665, new 666

Contig length: old 666, new 666
New start: 0