No. words: 1301; after pruning: 1261


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 0.0 (1,1:1084)  172  1.39 0.00 3.24  BE591258Ld01P026H09P026D121F1_037.ab1      378   593 (0)  C BE591258Ld01P026H09P026D121R1_037.ab1   (6)   702   494 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1    BE591258Ld01P026H09P026D121F1_037.ab1     1 
  460  C BE591258Ld01P026H09P026D121R1_037.ab1   627 
  468    BE591258Ld01P026H09P026D121F1_037.ab1   468 
  476  C BE591258Ld01P026H09P026D121R1_037.ab1   611 
  480    BE591258Ld01P026H09P026D121F1_037.ab1   480 
  492  C BE591258Ld01P026H09P026D121R1_037.ab1   595 
  532    BE591258Ld01P026H09P026D121F1_037.ab1   532 
  540  C BE591258Ld01P026H09P026D121R1_037.ab1   547 
Contig length: old 1085, new 1086

Contig length: old 1086, new 1086
New start: 0