No. words: 1386; after pruning: 1346


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 0.6 (1,1:1088)  252  1.34 0.67 1.67  BE591258Ld07P026H09P026D121F1_042.ab1      375   673 (0)  C BE591258Ld07P026H09P026D121R1_042.ab1   (2)   711   416 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  116 nodes

 60 str. conn. components

Path
    1    BE591258Ld07P026H09P026D121F1_042.ab1     1 
  489  C BE591258Ld07P026H09P026D121R1_042.ab1   602 
  497    BE591258Ld07P026H09P026D121F1_042.ab1   497 
  501  C BE591258Ld07P026H09P026D121R1_042.ab1   590 
  509    BE591258Ld07P026H09P026D121F1_042.ab1   509 
  513  C BE591258Ld07P026H09P026D121R1_042.ab1   578 
  535    BE591258Ld07P026H09P026D121F1_042.ab1   535 
  539  C BE591258Ld07P026H09P026D121R1_042.ab1   552 
Contig length: old 1089, new 1090

Contig length: old 1090, new 1090
New start: 0