No. words: 1351; after pruning: 1325


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:509)  498  0.20 0.00 0.20  BE591684Ld08P078F03P078F091F1_064.ab1        1   510 (176)  C BE591684Ld08P078F03P078F091R1_064.ab1   (156)   509     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C BE591684Ld08P078F03P078F091R1_064.ab1   665 
  562    BE591684Ld08P078F03P078F091F1_064.ab1   406 
  574  C BE591684Ld08P078F03P078F091R1_064.ab1    92 
  578    BE591684Ld08P078F03P078F091F1_064.ab1   422 
  606  C BE591684Ld08P078F03P078F091R1_064.ab1    60 
  614    BE591684Ld08P078F03P078F091F1_064.ab1   458 
  634  C BE591684Ld08P078F03P078F091R1_064.ab1    32 
  646    BE591684Ld08P078F03P078F091F1_064.ab1   490 
Contig length: old 841, new 842

Contig length: old 842, new 842
New start: 0