No. words: 1381; after pruning: 1355


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   10    0.0 8.8 (1,1:542)  524  0.00 0.00 0.19  BE591684Ld12P078F03P078F091F1_089.ab1       11   543 (163)  C BE591684Ld12P078F03P078F091R1_089.ab1   (143)   532     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
10       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C BE591684Ld12P078F03P078F091R1_089.ab1   675 
  207    BE591684Ld12P078F03P078F091F1_089.ab1    74 
  211  C BE591684Ld12P078F03P078F091R1_089.ab1   465 
  519    BE591684Ld12P078F03P078F091F1_089.ab1   386 
  527  C BE591684Ld12P078F03P078F091R1_089.ab1   149 
  535    BE591684Ld12P078F03P078F091F1_089.ab1   402 
  543  C BE591684Ld12P078F03P078F091R1_089.ab1   133 
  575    BE591684Ld12P078F03P078F091F1_089.ab1   442 
  591  C BE591684Ld12P078F03P078F091R1_089.ab1    85 
  595    BE591684Ld12P078F03P078F091F1_089.ab1   462 
  607  C BE591684Ld12P078F03P078F091R1_089.ab1    69 
  627    BE591684Ld12P078F03P078F091F1_089.ab1   494 
  631  C BE591684Ld12P078F03P078F091R1_089.ab1    45 
  639    BE591684Ld12P078F03P078F091F1_089.ab1   506 
Contig length: old 838, new 839

Contig length: old 839, new 839
New start: 0