No. words: 1372; after pruning: 1346


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.6 (1,1:530)  518  0.00 0.19 0.00  BE591684Ld20P078F03P078F091F1_088.ab1        4   530 (171)  C BE591684Ld20P078F03P078F091R1_088.ab1   (142)   529     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C BE591684Ld20P078F03P078F091R1_088.ab1   671 
  264    BE591684Ld20P078F03P078F091F1_088.ab1   124 
  276  C BE591684Ld20P078F03P078F091R1_088.ab1   396 
  300    BE591684Ld20P078F03P078F091F1_088.ab1   160 
  312  C BE591684Ld20P078F03P078F091R1_088.ab1   360 
  536    BE591684Ld20P078F03P078F091F1_088.ab1   396 
  544  C BE591684Ld20P078F03P078F091R1_088.ab1   128 
  556    BE591684Ld20P078F03P078F091F1_088.ab1   416 
  596  C BE591684Ld20P078F03P078F091R1_088.ab1    76 
  600    BE591684Ld20P078F03P078F091F1_088.ab1   460 
  608  C BE591684Ld20P078F03P078F091R1_088.ab1    64 
  616    BE591684Ld20P078F03P078F091F1_088.ab1   476 
  628  C BE591684Ld20P078F03P078F091R1_088.ab1    44 
  632    BE591684Ld20P078F03P078F091F1_088.ab1   492 
Contig length: old 841, new 841

Contig length: old 841, new 841
New start: 0