No. words: 1547; after pruning: 1507


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.8 (1,1:1288)  235  1.55 0.00 0.39  BE591804Tu01P026C10P026G121F1_055.ab1      423   680 (0)  C BE591804Tu01P026C10P026G121R1_055.ab1   (0)   867   611 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  116 nodes

 60 str. conn. components

Path
    1    BE591804Tu01P026C10P026G121F1_055.ab1     1 
  509  C BE591804Tu01P026C10P026G121R1_055.ab1   782 
  513    BE591804Tu01P026C10P026G121F1_055.ab1   513 
  529  C BE591804Tu01P026C10P026G121R1_055.ab1   762 
  541    BE591804Tu01P026C10P026G121F1_055.ab1   541 
  545  C BE591804Tu01P026C10P026G121R1_055.ab1   746 
  549    BE591804Tu01P026C10P026G121F1_055.ab1   549 
  563  C BE591804Tu01P026C10P026G121R1_055.ab1   728 
  567    BE591804Tu01P026C10P026G121F1_055.ab1   567 
  575  C BE591804Tu01P026C10P026G121R1_055.ab1   716 
Contig length: old 1289, new 1290

Contig length: old 1290, new 1290
New start: 0 
S Change at: 445; seg lengths: entry 2, contig 2