No. words: 1042; after pruning: 1016


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:-49)  451  1.22 0.20 0.00  BE606960At02P003E04E101F1_08.ab1        1   492 (8)    BE606960At02P003E04E101R1_08.ab1       50   542 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1    BE606960At02P003E04E101R1_08.ab1     1 
   69    BE606960At02P003E04E101F1_08.ab1    20 
   77    BE606960At02P003E04E101R1_08.ab1    77 
  101    BE606960At02P003E04E101F1_08.ab1    52 
  105    BE606960At02P003E04E101R1_08.ab1   105 
  117    BE606960At02P003E04E101F1_08.ab1    68 
  141    BE606960At02P003E04E101R1_08.ab1   141 
  149    BE606960At02P003E04E101F1_08.ab1   100 
  165    BE606960At02P003E04E101R1_08.ab1   165 
  173    BE606960At02P003E04E101F1_08.ab1   124 
  189    BE606960At02P003E04E101R1_08.ab1   189 
  197    BE606960At02P003E04E101F1_08.ab1   148 
  201    BE606960At02P003E04E101R1_08.ab1   201 
  209    BE606960At02P003E04E101F1_08.ab1   160 
  305    BE606960At02P003E04E101R1_08.ab1   305 
  313    BE606960At02P003E04E101F1_08.ab1   264 
  317    BE606960At02P003E04E101R1_08.ab1   317 
  325    BE606960At02P003E04E101F1_08.ab1   276 
  372    BE606960At02P003E04E101R1_08.ab1   373 
  380    BE606960At02P003E04E101F1_08.ab1   331 
  409    BE606960At02P003E04E101R1_08.ab1   410 
  413    BE606960At02P003E04E101F1_08.ab1   364 
  421    BE606960At02P003E04E101R1_08.ab1   422 
  429    BE606960At02P003E04E101F1_08.ab1   380 
  433    BE606960At02P003E04E101R1_08.ab1   434 
  437    BE606960At02P003E04E101F1_08.ab1   388 
  457    BE606960At02P003E04E101R1_08.ab1   458 
  461    BE606960At02P003E04E101F1_08.ab1   412 
  465    BE606960At02P003E04E101R1_08.ab1   466 
  469    BE606960At02P003E04E101F1_08.ab1   420 
  473    BE606960At02P003E04E101R1_08.ab1   474 
  491    BE606960At02P003E04E101F1_08.ab1   442 
  515    BE606960At02P003E04E101R1_08.ab1   516 
  519    BE606960At02P003E04E101F1_08.ab1   470 
  527    BE606960At02P003E04E101R1_08.ab1   528 
  531    BE606960At02P003E04E101F1_08.ab1   482 
Contig length: old 549, new 549

Contig length: old 549, new 549
New start: 0 
S Change at: 498; seg lengths: entry 1, contig 1
S Change at: 503; seg lengths: entry 1, contig 1