No. words: 1193; after pruning: 1167


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 9.0 (1,1:435)  430  0.00 0.00 0.00  BE637668Ld04P129H05P129H111F1_073.ab1        6   436 (182)  C BE637668Ld04P129H05P129H111R1_073.ab1   (144)   431     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C BE637668Ld04P129H05P129H111R1_073.ab1   575 
  196    BE637668Ld04P129H05P129H111F1_073.ab1    57 
  208  C BE637668Ld04P129H05P129H111R1_073.ab1   368 
  236    BE637668Ld04P129H05P129H111F1_073.ab1    97 
  240  C BE637668Ld04P129H05P129H111R1_073.ab1   336 
  288    BE637668Ld04P129H05P129H111F1_073.ab1   149 
  296  C BE637668Ld04P129H05P129H111R1_073.ab1   280 
  324    BE637668Ld04P129H05P129H111F1_073.ab1   185 
  328  C BE637668Ld04P129H05P129H111R1_073.ab1   248 
  384    BE637668Ld04P129H05P129H111F1_073.ab1   245 
  388  C BE637668Ld04P129H05P129H111R1_073.ab1   188 
  392    BE637668Ld04P129H05P129H111F1_073.ab1   253 
  400  C BE637668Ld04P129H05P129H111R1_073.ab1   176 
  444    BE637668Ld04P129H05P129H111F1_073.ab1   305 
  460  C BE637668Ld04P129H05P129H111R1_073.ab1   116 
  480    BE637668Ld04P129H05P129H111F1_073.ab1   341 
  520  C BE637668Ld04P129H05P129H111R1_073.ab1    56 
  540    BE637668Ld04P129H05P129H111F1_073.ab1   401 
Contig length: old 757, new 757

Contig length: old 757, new 757
New start: 0