No. words: 1200; after pruning: 1174


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.3 (1,1:443)  434  0.00 0.00 0.23  BE637668Ld06P129H05P129H111F1_069.ab1        5   444 (173)  C BE637668Ld06P129H05P129H111R1_069.ab1   (144)   439     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C BE637668Ld06P129H05P129H111R1_069.ab1   583 
  196    BE637668Ld06P129H05P129H111F1_069.ab1    56 
  200  C BE637668Ld06P129H05P129H111R1_069.ab1   384 
  216    BE637668Ld06P129H05P129H111F1_069.ab1    76 
  224  C BE637668Ld06P129H05P129H111R1_069.ab1   360 
  308    BE637668Ld06P129H05P129H111F1_069.ab1   168 
  316  C BE637668Ld06P129H05P129H111R1_069.ab1   268 
  336    BE637668Ld06P129H05P129H111F1_069.ab1   196 
  340  C BE637668Ld06P129H05P129H111R1_069.ab1   244 
  364    BE637668Ld06P129H05P129H111F1_069.ab1   224 
  368  C BE637668Ld06P129H05P129H111R1_069.ab1   216 
  392    BE637668Ld06P129H05P129H111F1_069.ab1   252 
  400  C BE637668Ld06P129H05P129H111R1_069.ab1   184 
  428    BE637668Ld06P129H05P129H111F1_069.ab1   288 
  436  C BE637668Ld06P129H05P129H111R1_069.ab1   148 
  444    BE637668Ld06P129H05P129H111F1_069.ab1   304 
  460  C BE637668Ld06P129H05P129H111R1_069.ab1   124 
  480    BE637668Ld06P129H05P129H111F1_069.ab1   340 
  520  C BE637668Ld06P129H05P129H111R1_069.ab1    64 
  532    BE637668Ld06P129H05P129H111F1_069.ab1   392 
Contig length: old 756, new 757

Contig length: old 757, new 757
New start: 0