No. words: 2331; after pruning: 2265


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.2 (1,1:1555)  231  0.42 0.00 0.00  BE637789Ld12P078D04P078D101F1_076.ab1      670   906 (0)  C BE637789Ld12P078D04P078D101R1_076.ab1   (0)   887   651 *
Merge:(0)    0    0.0 2.0 (1,1:93)   93  0.00 0.00 0.00  BE637789Ld12P078D04P078D101F1_027.ab1        1    94 (189)  C BE637789Ld12P078D04P078D101R1_027.ab1   (161)    94     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  118 nodes

 61 str. conn. components

Path
    1    BE637789Ld12P078D04P078D101F1_076.ab1     1 
  717  C BE637789Ld12P078D04P078D101R1_076.ab1   840 
  725    BE637789Ld12P078D04P078D101F1_076.ab1   725 
  749  C BE637789Ld12P078D04P078D101R1_076.ab1   808 
  753    BE637789Ld12P078D04P078D101F1_076.ab1   753 
  773  C BE637789Ld12P078D04P078D101R1_076.ab1   784 
  777    BE637789Ld12P078D04P078D101F1_076.ab1   777 
  785  C BE637789Ld12P078D04P078D101R1_076.ab1   772 
  789    BE637789Ld12P078D04P078D101F1_076.ab1   789 
  797  C BE637789Ld12P078D04P078D101R1_076.ab1   760 
  801    BE637789Ld12P078D04P078D101F1_076.ab1   801 
  805  C BE637789Ld12P078D04P078D101R1_076.ab1   752 
  869    BE637789Ld12P078D04P078D101F1_076.ab1   869 
  873  C BE637789Ld12P078D04P078D101R1_076.ab1   684 
Contig length: old 1556, new 1556

Contig 1:  48 nodes

 26 str. conn. components

Path
    1  C BE637789Ld12P078D04P078D101R1_027.ab1   255 
  181    BE637789Ld12P078D04P078D101F1_027.ab1    20 
  201  C BE637789Ld12P078D04P078D101R1_027.ab1    55 
  209    BE637789Ld12P078D04P078D101F1_027.ab1    48 
  213  C BE637789Ld12P078D04P078D101R1_027.ab1    43 
  217    BE637789Ld12P078D04P078D101F1_027.ab1    56 
Contig length: old 444, new 444

Contig length: old 1556, new 1556
New start: 0 

Contig length: old 444, new 444
New start: 0