No. words: 1297; after pruning: 1271


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    9    0.0 8.9 (1,1:499)  476  0.00 0.21 0.21  BE637806Ld07P027C01P027C071F1_083.ab1       10   496 (139)  C BE637806Ld07P027C01P027C071R1_083.ab1   (171)   491     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 9       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C BE637806Ld07P027C01P027C071R1_083.ab1   662 
  529    BE637806Ld07P027C01P027C071F1_083.ab1   366 
  597  C BE637806Ld07P027C01P027C071R1_083.ab1    66 
  605    BE637806Ld07P027C01P027C071F1_083.ab1   442 
Contig length: old 797, new 798

Contig length: old 798, new 798
New start: 0