No. words: 582; after pruning: 542


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)   17   -3.7 -3.7 (1,1:486)   63  5.13 0.00 0.00  BF145392Td04P137B06P078E101F1_014.ab1       92   169 (0)  C BF145392Td04P137B06P078E101R1_014.ab1   (17)   396   319 *
  Worst pair: offset 0 
LLR breakdown: discreps: -4.8 (<20 part: -4.8 (#=4), >20:0.0 (#=0); in HQ: -4.8, out HQ 0.0), match: 1.6  lead: -0.6  total: -3.8   63  5.13 0.00 0.00  BF145392Td04P137B06P078E101F1_014.ab1       92   169 (0)  C BF145392Td04P137B06P078E101R1_014.ab1   (17)   396   319 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.7       1        0

Gap   # merges  # failures
 size
17       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  28 nodes

 16 str. conn. components

Path
    1    BF145392Td04P137B06P078E101F1_014.ab1     1 
  127  C BF145392Td04P137B06P078E101R1_014.ab1   361 
  131    BF145392Td04P137B06P078E101F1_014.ab1   131 
  139  C BF145392Td04P137B06P078E101R1_014.ab1   349 
  159    BF145392Td04P137B06P078E101F1_014.ab1   159 
  163  C BF145392Td04P137B06P078E101R1_014.ab1   325 
Contig length: old 487, new 487

Contig length: old 487, new 487
New start: 0 
S Change at: 242; seg lengths: entry 1, contig 1