No. words: 1591; after pruning: 1551


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.9 (1,1:828)  749  0.13 0.00 0.00  BF200774Ld06P003F06P003F121F1_022.ab1       37   798 (0)  C BF200774Ld06P003F06P003F121R1_022.ab1   (0)   793    32 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  380 nodes

 192 str. conn. components

Path
    1    BF200774Ld06P003F06P003F121F1_022.ab1     1 
  288  C BF200774Ld06P003F06P003F121R1_022.ab1   542 
  296    BF200774Ld06P003F06P003F121F1_022.ab1   296 
  316  C BF200774Ld06P003F06P003F121R1_022.ab1   514 
  328    BF200774Ld06P003F06P003F121F1_022.ab1   328 
  344  C BF200774Ld06P003F06P003F121R1_022.ab1   486 
  352    BF200774Ld06P003F06P003F121F1_022.ab1   352 
  360  C BF200774Ld06P003F06P003F121R1_022.ab1   470 
  376    BF200774Ld06P003F06P003F121F1_022.ab1   376 
  392  C BF200774Ld06P003F06P003F121R1_022.ab1   438 
  412    BF200774Ld06P003F06P003F121F1_022.ab1   412 
  440  C BF200774Ld06P003F06P003F121R1_022.ab1   390 
  472    BF200774Ld06P003F06P003F121F1_022.ab1   472 
  488  C BF200774Ld06P003F06P003F121R1_022.ab1   342 
Contig length: old 829, new 829

Contig length: old 829, new 829
New start: 0