No. words: 1480; after pruning: 1440


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.3 (1,1:1121)  265  7.26 0.00 0.28  BF200942Ta15P034H06P003F101F1_087.ab1      373   730 (0)  C BF200942Ta15P034H06P003F101R1_087.ab1   (0)   750   394 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  114 nodes

 59 str. conn. components

Path
    1    BF200942Ta15P034H06P003F101F1_087.ab1     1 
  383  C BF200942Ta15P034H06P003F101R1_087.ab1   740 
  403    BF200942Ta15P034H06P003F101F1_087.ab1   403 
  407  C BF200942Ta15P034H06P003F101R1_087.ab1   716 
  447    BF200942Ta15P034H06P003F101F1_087.ab1   447 
  462  C BF200942Ta15P034H06P003F101R1_087.ab1   661 
  491    BF200942Ta15P034H06P003F101F1_087.ab1   491 
  495  C BF200942Ta15P034H06P003F101R1_087.ab1   628 
  554    BF200942Ta15P034H06P003F101F1_087.ab1   554 
  578  C BF200942Ta15P034H06P003F101R1_087.ab1   545 
  597    BF200942Ta15P034H06P003F101F1_087.ab1   597 
  609  C BF200942Ta15P034H06P003F101R1_087.ab1   514 
  621    BF200942Ta15P034H06P003F101F1_087.ab1   621 
  637  C BF200942Ta15P034H06P003F101R1_087.ab1   486 
  658    BF200942Ta15P034H06P003F101F1_087.ab1   658 
  662  C BF200942Ta15P034H06P003F101R1_087.ab1   461 
  683    BF200942Ta15P034H06P003F101F1_087.ab1   684 
  691  C BF200942Ta15P034H06P003F101R1_087.ab1   432 
  700    BF200942Ta15P034H06P003F101F1_087.ab1   701 
  714  C BF200942Ta15P034H06P003F101R1_087.ab1   409 
  722    BF200942Ta15P034H06P003F101F1_087.ab1   723 
  726  C BF200942Ta15P034H06P003F101R1_087.ab1   397 
Contig length: old 1122, new 1122

Contig length: old 1122, new 1122
New start: 0 
S Change at: 379; seg lengths: entry 1, contig 1
S Change at: 451; seg lengths: entry 4, contig 4
S Change at: 542; seg lengths: entry 1, contig 1
S Change at: 560; seg lengths: entry 1, contig 1
S Change at: 672; seg lengths: entry 1, contig 1