No. words: 1540; after pruning: 1514


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 0.3 (1,1:1123)  285  8.31 0.49 0.00  BF200942Ta21P034H06P003F101F1_092.ab1      261   669 (6)  C BF200942Ta21P034H06P003F101R1_092.ab1   (0)   865   455 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  124 nodes

 64 str. conn. components

Path
    1    BF200942Ta21P034H06P003F101F1_092.ab1     1 
  348  C BF200942Ta21P034H06P003F101R1_092.ab1   778 
  369    BF200942Ta21P034H06P003F101F1_092.ab1   369 
  373  C BF200942Ta21P034H06P003F101R1_092.ab1   753 
  500    BF200942Ta21P034H06P003F101F1_092.ab1   500 
  664  C BF200942Ta21P034H06P003F101R1_092.ab1   460 
Contig length: old 1124, new 1123

Contig length: old 1123, new 1124
New start: 0 
I Change at: 522; seg lengths: entry 3, contig 2
S Change at: 602; seg lengths: entry 1, contig 1