No. words: 1308; after pruning: 1256


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Rjct: (2)   41   -5.1 -5.1 (1,1:46)  138  8.78 1.46 0.00  BF203070Sn32P059F06P027C081R1_054.ab1       48   252 (43)    BF203070Sn32P059F06P027C081R1_050.ab1        1   208 (54) *
  Worst pair: offset 0 
LLR breakdown: discreps: -5.6 (<20 part: -5.6 (#=21), >20:0.0 (#=0); in HQ: -5.6, out HQ 0.0), match: 4.2  trail: -3.7  total: -5.1  138  8.78 1.46 0.00  BF203070Sn32P059F06P027C081R1_054.ab1       48   252 (43)    BF203070Sn32P059F06P027C081R1_050.ab1        1   208 (54) *
Rjct: (2)    5   -5.5 -5.5 (1,1:298)  135 16.84 0.00 0.00  BF203070Sn32P059F06P027C081F1_054.ab1       10   294 (122)  C BF203070Sn32P059F06P027C081R1_054.ab1   (5)   290     6 *
  Worst pair: offset 0 
LLR breakdown: discreps: -10.1 (<20 part: -10.1 (#=48), >20:0.0 (#=0); in HQ: -10.1, out HQ 0.0), match: 5.3  trail: -0.4  lead: -0.3  total: -5.5  135 16.84 0.00 0.00  BF203070Sn32P059F06P027C081F1_054.ab1       10   294 (122)  C BF203070Sn32P059F06P027C081R1_054.ab1   (5)   290     6 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.1       0        1
-5.5       0        1

Gap   # merges  # failures
 size
 5       0        1
41       0        1

Offset
  0       2 

Read equivalence class histogram:
    1    4

Chimera merges: 


Contig 4:  2 nodes

 2 str. conn. components

Path
    1    BF203070Sn32P059F06P027C081R1_050.ab1     1 
Contig length: old 262, new 262

Contig 3:  2 nodes

 2 str. conn. components

Path
    1    BF203070Sn32P059F06P027C081R1_054.ab1     1 
Contig length: old 295, new 295

Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BF203070Sn32P059F06P027C081F1_050.ab1     1 
Contig length: old 335, new 335

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BF203070Sn32P059F06P027C081F1_054.ab1     1 
Contig length: old 416, new 416