No. words: 245; after pruning: 219


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)   13   -3.2 -3.2 (1,1:68)   26  3.45 0.00 8.62  BF203070Td07P027C02P059A071F1_003.ab1       14    71 (43)  C BF203070Td07P027C02P059A071R1_003.ab1   (78)    53     1 *
  Worst pair: offset 1 
LLR breakdown: discreps: -4.4 (<20 part: -2.0 (#=6), >20:-2.4 (#=1); in HQ: -4.4, out HQ 0.0), match: 1.1  lead: 0.0  total: -3.3   26  3.45 0.00 8.62  BF203070Td07P027C02P059A071F1_003.ab1       14    71 (43)  C BF203070Td07P027C02P059A071R1_003.ab1   (78)    53     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.2       1        0

Gap   # merges  # failures
 size
13       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  16 nodes

 10 str. conn. components

Path
    1  C BF203070Td07P027C02P059A071R1_003.ab1   131 
   82    BF203070Td07P027C02P059A071F1_003.ab1    17 
   86  C BF203070Td07P027C02P059A071R1_003.ab1    46 
   90    BF203070Td07P027C02P059A071F1_003.ab1    25 
Contig length: old 176, new 179

Contig length: old 179, new 177
New start: 0 
D Change at: 104; seg lengths: entry 4, contig 6