No. words: 2728; after pruning: 2676


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.5 (1,1:6)  685  0.56 0.00 0.00  BF291928Ta14P108D06P081C071R1_068.ab1        7   721 (0)    BF291928Ta14P108D06P081C071R1_036.ab1        1   715 (4) *

Pass: 3
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    
 0  -20  746 520    421     E 100- 520
Fail: (1)  421   -0.1 -0.1 (1,1:20)   95  0.00 0.00 0.00  BF291928Ta14P108D06P081C071F1_068.ab1       21   120 (421)    BF291928Ta14P108D06P081C071F1_036.ab1        1   100 (647) *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.1       0        1

Gap   # merges  # failures
 size
421       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2
    2    1

Chimera merges: 

Merge:(0)  421    0.0 2.2 (1,1:-20)   95  0.00 0.00 0.00  BF291928Ta14P108D06P081C071F1_036.ab1        1   100 (647)    BF291928Ta14P108D06P081C071F1_068.ab1       21   120 (421) *

Contig 2:  46 nodes

 25 str. conn. components

Path
    1    BF291928Ta14P108D06P081C071F1_068.ab1     1 
   24    BF291928Ta14P108D06P081C071F1_036.ab1     4 
Contig length: old 767, new 767

Contig 1:  344 nodes

 174 str. conn. components

Path
    1    BF291928Ta14P108D06P081C071R1_068.ab1     1 
   18    BF291928Ta14P108D06P081C071R1_036.ab1    12 
   22    BF291928Ta14P108D06P081C071R1_068.ab1    22 
   65    BF291928Ta14P108D06P081C071R1_036.ab1    59 
   77    BF291928Ta14P108D06P081C071R1_068.ab1    77 
   93    BF291928Ta14P108D06P081C071R1_036.ab1    87 
  109    BF291928Ta14P108D06P081C071R1_068.ab1   109 
  189    BF291928Ta14P108D06P081C071R1_036.ab1   183 
  197    BF291928Ta14P108D06P081C071R1_068.ab1   197 
  201    BF291928Ta14P108D06P081C071R1_036.ab1   195 
  221    BF291928Ta14P108D06P081C071R1_068.ab1   221 
  285    BF291928Ta14P108D06P081C071R1_036.ab1   279 
  345    BF291928Ta14P108D06P081C071R1_068.ab1   345 
  361    BF291928Ta14P108D06P081C071R1_036.ab1   355 
  373    BF291928Ta14P108D06P081C071R1_068.ab1   373 
  401    BF291928Ta14P108D06P081C071R1_036.ab1   395 
Contig length: old 725, new 725

Contig length: old 767, new 767
New start: 0 

Contig length: old 725, new 725
New start: 0