No. words: 3381; after pruning: 3329


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 18.9 (1,1:0)  835  0.00 0.00 0.00  BF291928Td10P108D06P081C071F1_072.ab1        1   853 (11)    BF291928Td10P108D06P081C071F1_040.ab1        1   853 (2) *
Merge:(0)    0    0.0 16.9 (1,1:-1)  754  0.76 0.00 0.00  BF291928Td10P108D06P081C071R1_072.ab1        1   787 (0)    BF291928Td10P108D06P081C071R1_040.ab1        2   788 (87) *
Merge:(0)    0    0.0 16.5 (2,2:916)  798  0.12 0.12 0.00  BF291928Td10P108D06P081C071F1_072.ab1       45   864 (0)  C BF291928Td10P108D06P081C071R1_040.ab1   (0)   875    55 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       2        0
 2       1        0

Offset
  0       6 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  2308 nodes

 776 str. conn. components

Path
    1    BF291928Td10P108D06P081C071F1_072.ab1     1 
   16    BF291928Td10P108D06P081C071F1_040.ab1    16 
   92    BF291928Td10P108D06P081C071F1_072.ab1    92 
  100    BF291928Td10P108D06P081C071F1_040.ab1   100 
  128    BF291928Td10P108D06P081C071F1_072.ab1   128 
  139    BF291928Td10P108D06P081C071F1_040.ab1   139 
  220    BF291928Td10P108D06P081C071F1_072.ab1   220 
  224    BF291928Td10P108D06P081C071F1_040.ab1   224 
  500  C BF291928Td10P108D06P081C071R1_072.ab1   418 
  516    BF291928Td10P108D06P081C071F1_040.ab1   516 
  563  C BF291928Td10P108D06P081C071R1_040.ab1   356 
  571    BF291928Td10P108D06P081C071F1_040.ab1   571 
  576  C BF291928Td10P108D06P081C071R1_072.ab1   342 
  596    BF291928Td10P108D06P081C071F1_040.ab1   596 
  612  C BF291928Td10P108D06P081C071R1_072.ab1   306 
  658  C BF291928Td10P108D06P081C071R1_040.ab1   261 
  666  C BF291928Td10P108D06P081C071R1_072.ab1   252 
  694  C BF291928Td10P108D06P081C071R1_040.ab1   225 
  714  C BF291928Td10P108D06P081C071R1_072.ab1   204 
  826  C BF291928Td10P108D06P081C071R1_040.ab1    93 
  834  C BF291928Td10P108D06P081C071R1_072.ab1    84 
  902  C BF291928Td10P108D06P081C071R1_040.ab1    17 
Contig length: old 918, new 918

Contig length: old 918, new 918
New start: 0