No. words: 1683; after pruning: 1657


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.7 (1,1:870)  788  0.00 0.00 0.00  BF292295Ld20P114D02P114D051F1_044.ab1       75   871 (15)  C BF292295Ld20P114D02P114D051R1_044.ab1   (0)   797     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  400 nodes

 202 str. conn. components

Path
    1    BF292295Ld20P114D02P114D051F1_044.ab1     1 
  124  C BF292295Ld20P114D02P114D051R1_044.ab1   748 
  128    BF292295Ld20P114D02P114D051F1_044.ab1   128 
  444  C BF292295Ld20P114D02P114D051R1_044.ab1   428 
  452    BF292295Ld20P114D02P114D051F1_044.ab1   452 
  516  C BF292295Ld20P114D02P114D051R1_044.ab1   356 
  544    BF292295Ld20P114D02P114D051F1_044.ab1   544 
  552  C BF292295Ld20P114D02P114D051R1_044.ab1   320 
  568    BF292295Ld20P114D02P114D051F1_044.ab1   568 
  584  C BF292295Ld20P114D02P114D051R1_044.ab1   288 
  656    BF292295Ld20P114D02P114D051F1_044.ab1   656 
  660  C BF292295Ld20P114D02P114D051R1_044.ab1   212 
  740    BF292295Ld20P114D02P114D051F1_044.ab1   740 
  752  C BF292295Ld20P114D02P114D051R1_044.ab1   120 
  764    BF292295Ld20P114D02P114D051F1_044.ab1   764 
  772  C BF292295Ld20P114D02P114D051R1_044.ab1   100 
  780    BF292295Ld20P114D02P114D051F1_044.ab1   780 
  784  C BF292295Ld20P114D02P114D051R1_044.ab1    88 
  828    BF292295Ld20P114D02P114D051F1_044.ab1   828 
  836  C BF292295Ld20P114D02P114D051R1_044.ab1    36 
  868    BF292295Ld20P114D02P114D051F1_044.ab1   868 
Contig length: old 886, new 886

Contig length: old 886, new 886
New start: 0