No. words: 1448; after pruning: 1422


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.0 (1,1:792)  566  3.82 0.00 0.15  BF292596Sn29P108H06P081D071F1_049.ab1       45   699 (0)  C BF292596Sn29P108H06P081D071R1_049.ab1   (0)   749    96 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1    BF292596Sn29P108H06P081D071F1_049.ab1     1 
   76  C BF292596Sn29P108H06P081D071R1_049.ab1   718 
   80    BF292596Sn29P108H06P081D071F1_049.ab1    80 
  173  C BF292596Sn29P108H06P081D071R1_049.ab1   622 
  177    BF292596Sn29P108H06P081D071F1_049.ab1   177 
  498  C BF292596Sn29P108H06P081D071R1_049.ab1   297 
  680    BF292596Sn29P108H06P081D071F1_049.ab1   680 
  684  C BF292596Sn29P108H06P081D071R1_049.ab1   111 
Contig length: old 793, new 794

Contig length: old 794, new 794
New start: 0 
S Change at: 533; seg lengths: entry 1, contig 1