No. words: 1187; after pruning: 1161


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.8 (1,1:428)  405  0.00 0.24 0.00  BF293133Ld04P078B05P078B111F1_008.ab1        5   429 (158)  C BF293133Ld04P078B05P078B111R1_008.ab1   (174)   426     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C BF293133Ld04P078B05P078B111R1_008.ab1   600 
  283    BF293133Ld04P078B05P078B111F1_008.ab1   112 
  287  C BF293133Ld04P078B05P078B111R1_008.ab1   314 
  391    BF293133Ld04P078B05P078B111F1_008.ab1   220 
  551  C BF293133Ld04P078B05P078B111R1_008.ab1    50 
  563    BF293133Ld04P078B05P078B111F1_008.ab1   392 
  579  C BF293133Ld04P078B05P078B111R1_008.ab1    22 
  587    BF293133Ld04P078B05P078B111F1_008.ab1   416 
Contig length: old 758, new 758

Contig length: old 758, new 758
New start: 0