No. words: 1164; after pruning: 1138


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:569)  543  0.00 0.18 0.00  BF293500Ld02P078C05P078C111F1_025.ab1       17   570 (39)  C BF293500Ld02P078C05P078C111R1_025.ab1   (0)   555     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1    BF293500Ld02P078C05P078C111F1_025.ab1     1 
  292  C BF293500Ld02P078C05P078C111R1_025.ab1   279 
  296    BF293500Ld02P078C05P078C111F1_025.ab1   296 
  300  C BF293500Ld02P078C05P078C111R1_025.ab1   271 
  312    BF293500Ld02P078C05P078C111F1_025.ab1   312 
  340  C BF293500Ld02P078C05P078C111R1_025.ab1   231 
  352    BF293500Ld02P078C05P078C111F1_025.ab1   352 
  420  C BF293500Ld02P078C05P078C111R1_025.ab1   151 
  444    BF293500Ld02P078C05P078C111F1_025.ab1   444 
  452  C BF293500Ld02P078C05P078C111R1_025.ab1   119 
  492    BF293500Ld02P078C05P078C111F1_025.ab1   492 
  496  C BF293500Ld02P078C05P078C111R1_025.ab1    75 
  556    BF293500Ld02P078C05P078C111F1_025.ab1   556 
Contig length: old 609, new 609

Contig length: old 609, new 610
New start: 0 
I Change at: 25; seg lengths: entry 1, contig 0