No. words: 568; after pruning: 542


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    1   -0.6 -0.6 (1,1:88)   68  5.68 0.00 1.14  BF293500Sn29P078C05P101D091F2_051.ab1        1    88 (37)  C BF293500Sn29P078C05P101D091R2_051.ab1   (355)    88     2 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.6       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  30 nodes

 17 str. conn. components

Path
    1  C BF293500Sn29P078C05P101D091R2_051.ab1   443 
  438    BF293500Sn29P078C05P101D091F2_051.ab1    84 
Contig length: old 479, new 479

Contig length: old 479, new 479
New start: 0 
S Change at: 409; seg lengths: entry 1, contig 1