No. words: 1065; after pruning: 1013


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.2 (1,1:-8)  164  2.26 0.00 0.00  BF293500Tu01P078C05P078C111F1_065.ab1        1   177 (0)    BF293500Tu01P078C05P078C111F1_036.ab1        9   185 (261) *
Merge:(0)    0    0.0 2.1 (1,1:-19)  187  2.46 0.00 0.00  BF293500Tu01P078C05P078C111R1_065.ab1        1   203 (17)    BF293500Tu01P078C05P078C111R1_036.ab1       20   222 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  90 nodes

 47 str. conn. components

Path
    1    BF293500Tu01P078C05P078C111R1_036.ab1     1 
   27    BF293500Tu01P078C05P078C111R1_065.ab1     8 
   37    BF293500Tu01P078C05P078C111R1_036.ab1    37 
   95    BF293500Tu01P078C05P078C111R1_065.ab1    76 
  128    BF293500Tu01P078C05P078C111R1_036.ab1   128 
  132    BF293500Tu01P078C05P078C111R1_065.ab1   113 
  136    BF293500Tu01P078C05P078C111R1_036.ab1   136 
  148    BF293500Tu01P078C05P078C111R1_065.ab1   129 
  160    BF293500Tu01P078C05P078C111R1_036.ab1   160 
  198    BF293500Tu01P078C05P078C111R1_065.ab1   179 
  206    BF293500Tu01P078C05P078C111R1_036.ab1   206 
  218    BF293500Tu01P078C05P078C111R1_065.ab1   199 
Contig length: old 239, new 239

Contig 1:  82 nodes

 43 str. conn. components

Path
    1    BF293500Tu01P078C05P078C111F1_036.ab1     1 
   95    BF293500Tu01P078C05P078C111F1_065.ab1    87 
   99    BF293500Tu01P078C05P078C111F1_036.ab1    99 
Contig length: old 446, new 446

Contig length: old 239, new 239
New start: 0 
S Change at: 100; seg lengths: entry 3, contig 3

Contig length: old 446, new 446
New start: 0