No. words: 1451; after pruning: 1412


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.9 (1,1:314)  292  0.00 1.29 0.00  BF473348Ld06P016G06G12F1_090.scf        1   310 (185)  C BF473348Ld06P016G06G12R1_090.ab1   (143)   318     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  140 nodes

 72 str. conn. components

Path
    1  C BF473348Ld06P016G06G12R1_090.ab1   461 
  187    BF473348Ld06P016G06G12F1_090.scf    40 
Contig length: old 641, new 642

Contig length: old 642, new 642
New start: 0