No. words: 1784; after pruning: 1758


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 17.5 (1,1:863)  842  0.35 0.12 0.12  BF474333Ld03P067C05P067C111F1_064.ab1        1   863 (24)  C BF474333Ld03P067C05P067C111R1_064.ab1   (34)   863     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  418 nodes

 211 str. conn. components

Path
    1  C BF474333Ld03P067C05P067C111R1_064.ab1   897 
   38    BF474333Ld03P067C05P067C111F1_064.ab1     4 
   74  C BF474333Ld03P067C05P067C111R1_064.ab1   824 
   82    BF474333Ld03P067C05P067C111F1_064.ab1    48 
  206  C BF474333Ld03P067C05P067C111R1_064.ab1   692 
  218    BF474333Ld03P067C05P067C111F1_064.ab1   184 
  222  C BF474333Ld03P067C05P067C111R1_064.ab1   676 
  230    BF474333Ld03P067C05P067C111F1_064.ab1   196 
  234  C BF474333Ld03P067C05P067C111R1_064.ab1   664 
  254    BF474333Ld03P067C05P067C111F1_064.ab1   220 
  270  C BF474333Ld03P067C05P067C111R1_064.ab1   628 
  534    BF474333Ld03P067C05P067C111F1_064.ab1   500 
  542  C BF474333Ld03P067C05P067C111R1_064.ab1   356 
  546    BF474333Ld03P067C05P067C111F1_064.ab1   512 
  662  C BF474333Ld03P067C05P067C111R1_064.ab1   236 
  690    BF474333Ld03P067C05P067C111F1_064.ab1   656 
  706  C BF474333Ld03P067C05P067C111R1_064.ab1   192 
  730    BF474333Ld03P067C05P067C111F1_064.ab1   696 
  734  C BF474333Ld03P067C05P067C111R1_064.ab1   164 
Contig length: old 920, new 897

Contig length: old 897, new 897
New start: 0