No. words: 1818; after pruning: 1792


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.5 (1,1:837)  830  0.00 0.00 0.12  BF482385Ld04P027H02P027H081F1_069.ab1        1   838 (76)  C BF482385Ld04P027H02P027H081R1_069.ab1   (67)   837     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  418 nodes

 211 str. conn. components

Path
    1  C BF482385Ld04P027H02P027H081R1_069.ab1   904 
   71    BF482385Ld04P027H02P027H081F1_069.ab1     4 
   75  C BF482385Ld04P027H02P027H081R1_069.ab1   830 
   83    BF482385Ld04P027H02P027H081F1_069.ab1    16 
  163  C BF482385Ld04P027H02P027H081R1_069.ab1   742 
  167    BF482385Ld04P027H02P027H081F1_069.ab1   100 
  703  C BF482385Ld04P027H02P027H081R1_069.ab1   202 
  743    BF482385Ld04P027H02P027H081F1_069.ab1   676 
  755  C BF482385Ld04P027H02P027H081R1_069.ab1   150 
  875    BF482385Ld04P027H02P027H081F1_069.ab1   808 
  883  C BF482385Ld04P027H02P027H081R1_069.ab1    22 
  887    BF482385Ld04P027H02P027H081F1_069.ab1   820 
Contig length: old 980, new 981

Contig length: old 981, new 981
New start: 0