No. words: 2529; after pruning: 2476


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.8 (1,1:916)  821  0.48 0.00 0.12  BF482977Ld01P027A03P027A091F1_072.ab1       47   888 (0)  C BF482977Ld01P027A03P027A091R1_072.ab1   (0)   871    31 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 2:  408 nodes

 206 str. conn. components

Path
    1    BF482977Ld01P027A03P027A091F1_072.ab1     1 
  575  C BF482977Ld01P027A03P027A091R1_072.ab1   343 
Contig length: old 917, new 917

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BF482977Ld01P027A03P027A091F1_083.ab1     1 
Contig length: old 770, new 770

Contig length: old 917, new 918
New start: 0 
I Change at: 882; seg lengths: entry 1, contig 0