No. words: 1659; after pruning: 1633


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.6 (1,1:778)  772  0.00 0.13 0.00  BF482977Sn32P088F09P095B121F1_050.ab1        1   779 (56)  C BF482977Sn32P088F09P095B121R1_050.ab1   (44)   780     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  388 nodes

 196 str. conn. components

Path
    1  C BF482977Sn32P088F09P095B121R1_050.ab1   824 
   48    BF482977Sn32P088F09P095B121F1_050.ab1     4 
   75  C BF482977Sn32P088F09P095B121R1_050.ab1   749 
   79    BF482977Sn32P088F09P095B121F1_050.ab1    35 
  231  C BF482977Sn32P088F09P095B121R1_050.ab1   593 
  235    BF482977Sn32P088F09P095B121F1_050.ab1   191 
  279  C BF482977Sn32P088F09P095B121R1_050.ab1   545 
  695    BF482977Sn32P088F09P095B121F1_050.ab1   651 
  703  C BF482977Sn32P088F09P095B121R1_050.ab1   121 
  819    BF482977Sn32P088F09P095B121F1_050.ab1   775 
Contig length: old 880, new 879

Contig length: old 879, new 880
New start: 0 
I Change at: 60; seg lengths: entry 1, contig 0