No. words: 1540; after pruning: 1514


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.9 (1,1:719)  716  0.14 0.00 0.00  BF484268At02P114H02P114B061F1_017.ab1        1   720 (53)  C BF484268At02P114H02P114B061R1_017.ab1   (47)   720     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  358 nodes

 181 str. conn. components

Path
    1  C BF484268At02P114H02P114B061R1_017.ab1   767 
   63    BF484268At02P114H02P114B061F1_017.ab1    16 
   71  C BF484268At02P114H02P114B061R1_017.ab1   697 
   87    BF484268At02P114H02P114B061F1_017.ab1    40 
  119  C BF484268At02P114H02P114B061R1_017.ab1   649 
  131    BF484268At02P114H02P114B061F1_017.ab1    84 
  139  C BF484268At02P114H02P114B061R1_017.ab1   629 
  147    BF484268At02P114H02P114B061F1_017.ab1   100 
  167  C BF484268At02P114H02P114B061R1_017.ab1   601 
  171    BF484268At02P114H02P114B061F1_017.ab1   124 
  263  C BF484268At02P114H02P114B061R1_017.ab1   505 
  267    BF484268At02P114H02P114B061F1_017.ab1   220 
  415  C BF484268At02P114H02P114B061R1_017.ab1   353 
  419    BF484268At02P114H02P114B061F1_017.ab1   372 
  427  C BF484268At02P114H02P114B061R1_017.ab1   341 
  487    BF484268At02P114H02P114B061F1_017.ab1   440 
  499  C BF484268At02P114H02P114B061R1_017.ab1   269 
  515    BF484268At02P114H02P114B061F1_017.ab1   468 
  519  C BF484268At02P114H02P114B061R1_017.ab1   249 
  627    BF484268At02P114H02P114B061F1_017.ab1   580 
  659  C BF484268At02P114H02P114B061R1_017.ab1   109 
  667    BF484268At02P114H02P114B061F1_017.ab1   620 
  679  C BF484268At02P114H02P114B061R1_017.ab1    89 
  695    BF484268At02P114H02P114B061F1_017.ab1   648 
  703  C BF484268At02P114H02P114B061R1_017.ab1    65 
  711    BF484268At02P114H02P114B061F1_017.ab1   664 
  723  C BF484268At02P114H02P114B061R1_017.ab1    45 
  727    BF484268At02P114H02P114B061F1_017.ab1   680 
  745  C BF484268At02P114H02P114B061R1_017.ab1    23 
  761    BF484268At02P114H02P114B061F1_017.ab1   714 
Contig length: old 820, new 820

Contig length: old 820, new 820
New start: 0