No. words: 1049; after pruning: 1023


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 5.8 (1,1:364)  355  0.28 0.00 0.00  BF484268Ld09P027F03P027F091F1_052.ab1        5   364 (144)  C BF484268Ld09P027F03P027F091R1_052.ab1   (180)   361     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  178 nodes

 91 str. conn. components

Path
    1  C BF484268Ld09P027F03P027F091R1_052.ab1   541 
  242    BF484268Ld09P027F03P027F091F1_052.ab1    66 
  246  C BF484268Ld09P027F03P027F091R1_052.ab1   296 
  250    BF484268Ld09P027F03P027F091F1_052.ab1    74 
  274  C BF484268Ld09P027F03P027F091R1_052.ab1   268 
  282    BF484268Ld09P027F03P027F091F1_052.ab1   106 
  334  C BF484268Ld09P027F03P027F091R1_052.ab1   208 
  354    BF484268Ld09P027F03P027F091F1_052.ab1   178 
  370  C BF484268Ld09P027F03P027F091R1_052.ab1   172 
  374    BF484268Ld09P027F03P027F091F1_052.ab1   198 
Contig length: old 684, new 684

Contig length: old 684, new 684
New start: 0