No. words: 1559; after pruning: 1519


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.4 (1,1:862)  687  0.14 0.00 0.00  BG262734Td09P116C10P067A121F1_007.ab1       91   786 (0)  C BG262734Td09P116C10P067A121R1_007.ab1   (0)   773    78 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1    BG262734Td09P116C10P067A121F1_007.ab1     1 
  452  C BG262734Td09P116C10P067A121R1_007.ab1   412 
  464    BG262734Td09P116C10P067A121F1_007.ab1   464 
  472  C BG262734Td09P116C10P067A121R1_007.ab1   392 
  480    BG262734Td09P116C10P067A121F1_007.ab1   480 
  492  C BG262734Td09P116C10P067A121R1_007.ab1   372 
  496    BG262734Td09P116C10P067A121F1_007.ab1   496 
  524  C BG262734Td09P116C10P067A121R1_007.ab1   340 
  528    BG262734Td09P116C10P067A121F1_007.ab1   528 
  536  C BG262734Td09P116C10P067A121R1_007.ab1   328 
  572    BG262734Td09P116C10P067A121F1_007.ab1   572 
  576  C BG262734Td09P116C10P067A121R1_007.ab1   288 
Contig length: old 863, new 863

Contig length: old 863, new 863
New start: 0