No. words: 1001; after pruning: 975


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.3 (1,1:868)  107  0.76 1.53 0.76  BG262775Ld04P067B06P067B121F1_031.ab1      450   580 (0)  C BG262775Ld04P067B06P067B121R1_031.ab1   (0)   421   290 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  56 nodes

 30 str. conn. components

Path
    1    BG262775Ld04P067B06P067B121F1_031.ab1     1 
  509  C BG262775Ld04P067B06P067B121R1_031.ab1   361 
  529    BG262775Ld04P067B06P067B121F1_031.ab1   529 
  533  C BG262775Ld04P067B06P067B121R1_031.ab1   337 
Contig length: old 869, new 869

Contig length: old 869, new 869
New start: 0