No. words: 1123; after pruning: 1083


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.4 (1,1:852)  252  1.11 0.00 0.00  BG262775Ld06P067B06P067B121F1_027.ab1      367   636 (0)  C BG262775Ld06P067B06P067B121R1_027.ab1   (0)   487   218 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  128 nodes

 66 str. conn. components

Path
    1    BG262775Ld06P067B06P067B121F1_027.ab1     1 
  495  C BG262775Ld06P067B06P067B121R1_027.ab1   359 
  503    BG262775Ld06P067B06P067B121F1_027.ab1   503 
  507  C BG262775Ld06P067B06P067B121R1_027.ab1   347 
  527    BG262775Ld06P067B06P067B121F1_027.ab1   527 
  531  C BG262775Ld06P067B06P067B121R1_027.ab1   323 
  535    BG262775Ld06P067B06P067B121F1_027.ab1   535 
  547  C BG262775Ld06P067B06P067B121R1_027.ab1   307 
  567    BG262775Ld06P067B06P067B121F1_027.ab1   567 
  587  C BG262775Ld06P067B06P067B121R1_027.ab1   267 
  603    BG262775Ld06P067B06P067B121F1_027.ab1   603 
  611  C BG262775Ld06P067B06P067B121R1_027.ab1   243 
Contig length: old 853, new 853

Contig length: old 853, new 853
New start: 0