No. words: 1041; after pruning: 1001


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 3.4 (1,1:853)  171  1.61 0.00 0.00  BG262775Ld07P067B06P067B121F1_025.ab1      444   629 (0)  C BG262775Ld07P067B06P067B121R1_025.ab1   (1)   411   226 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  84 nodes

 44 str. conn. components

Path
    1    BG262775Ld07P067B06P067B121F1_025.ab1     1 
  509  C BG262775Ld07P067B06P067B121R1_025.ab1   346 
  525    BG262775Ld07P067B06P067B121F1_025.ab1   525 
  533  C BG262775Ld07P067B06P067B121R1_025.ab1   322 
  537    BG262775Ld07P067B06P067B121F1_025.ab1   537 
  545  C BG262775Ld07P067B06P067B121R1_025.ab1   310 
  567    BG262775Ld07P067B06P067B121F1_025.ab1   567 
  587  C BG262775Ld07P067B06P067B121R1_025.ab1   268 
  599    BG262775Ld07P067B06P067B121F1_025.ab1   599 
  611  C BG262775Ld07P067B06P067B121R1_025.ab1   244 
  615    BG262775Ld07P067B06P067B121F1_025.ab1   615 
  619  C BG262775Ld07P067B06P067B121R1_025.ab1   236 
Contig length: old 854, new 854

Contig length: old 854, new 854
New start: 0