No. words: 965; after pruning: 939


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   14    0.0 3.3 (1,1:749)  179  1.99 0.00 0.00  BG262775Ld08P067B06P067B121F1_023.ab1      454   654 (14)  C BG262775Ld08P067B06P067B121R1_023.ab1   (0)   297    97 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
14       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  90 nodes

 47 str. conn. components

Path
    1    BG262775Ld08P067B06P067B121F1_023.ab1     1 
  504  C BG262775Ld08P067B06P067B121R1_023.ab1   247 
  516    BG262775Ld08P067B06P067B121F1_023.ab1   516 
  548  C BG262775Ld08P067B06P067B121R1_023.ab1   203 
  560    BG262775Ld08P067B06P067B121F1_023.ab1   560 
  581  C BG262775Ld08P067B06P067B121R1_023.ab1   170 
  589    BG262775Ld08P067B06P067B121F1_023.ab1   589 
  593  C BG262775Ld08P067B06P067B121R1_023.ab1   158 
  597    BG262775Ld08P067B06P067B121F1_023.ab1   597 
  605  C BG262775Ld08P067B06P067B121R1_023.ab1   146 
  609    BG262775Ld08P067B06P067B121F1_023.ab1   609 
  625  C BG262775Ld08P067B06P067B121R1_023.ab1   126 
  637    BG262775Ld08P067B06P067B121F1_023.ab1   637 
  646  C BG262775Ld08P067B06P067B121R1_023.ab1   105 
Contig length: old 750, new 750

Contig length: old 750, new 750
New start: 0