No. words: 1249; after pruning: 1223


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.1 (1,1:859)  366  0.52 0.00 0.00  BG262775Ld12P067B06P067B121F1_032.ab1      274   660 (2)  C BG262775Ld12P067B06P067B121R1_032.ab1   (0)   587   201 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1    BG262775Ld12P067B06P067B121F1_032.ab1     1 
  285  C BG262775Ld12P067B06P067B121R1_032.ab1   576 
  289    BG262775Ld12P067B06P067B121F1_032.ab1   289 
  385  C BG262775Ld12P067B06P067B121R1_032.ab1   476 
  397    BG262775Ld12P067B06P067B121F1_032.ab1   397 
  405  C BG262775Ld12P067B06P067B121R1_032.ab1   456 
  413    BG262775Ld12P067B06P067B121F1_032.ab1   413 
  440  C BG262775Ld12P067B06P067B121R1_032.ab1   421 
  448    BG262775Ld12P067B06P067B121F1_032.ab1   448 
  452  C BG262775Ld12P067B06P067B121R1_032.ab1   409 
  468    BG262775Ld12P067B06P067B121F1_032.ab1   468 
  504  C BG262775Ld12P067B06P067B121R1_032.ab1   357 
  508    BG262775Ld12P067B06P067B121F1_032.ab1   508 
  512  C BG262775Ld12P067B06P067B121R1_032.ab1   349 
  520    BG262775Ld12P067B06P067B121F1_032.ab1   520 
  524  C BG262775Ld12P067B06P067B121R1_032.ab1   337 
  528    BG262775Ld12P067B06P067B121F1_032.ab1   528 
  532  C BG262775Ld12P067B06P067B121R1_032.ab1   329 
  536    BG262775Ld12P067B06P067B121F1_032.ab1   536 
  540  C BG262775Ld12P067B06P067B121R1_032.ab1   321 
  560    BG262775Ld12P067B06P067B121F1_032.ab1   560 
  568  C BG262775Ld12P067B06P067B121R1_032.ab1   293 
  572    BG262775Ld12P067B06P067B121F1_032.ab1   572 
  580  C BG262775Ld12P067B06P067B121R1_032.ab1   281 
  596    BG262775Ld12P067B06P067B121F1_032.ab1   596 
  604  C BG262775Ld12P067B06P067B121R1_032.ab1   257 
  612    BG262775Ld12P067B06P067B121F1_032.ab1   612 
  616  C BG262775Ld12P067B06P067B121R1_032.ab1   245 
Contig length: old 860, new 860

Contig length: old 860, new 860
New start: 0