No. words: 909; after pruning: 883


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Rjct: (2)    0   -5.3 -5.3 (1,1:167)   61 20.83 0.00 0.00  BG263780Ld02P081E02P081E081F1_096.ab1        1   168 (433)  C BG263780Ld02P081E02P081E081R1_096.ab1   (140)   168     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -8.3 (<20 part: -8.3 (#=35), >20:0.0 (#=0); in HQ: -8.3, out HQ 0.0), match: 3.0  total: -5.3   61 20.83 0.00 0.00  BG263780Ld02P081E02P081E081F1_096.ab1        1   168 (433)  C BG263780Ld02P081E02P081E081R1_096.ab1   (140)   168     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.3       0        1

Gap   # merges  # failures
 size
 0       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BG263780Ld02P081E02P081E081R1_096.ab1     1 
Contig length: old 308, new 308

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BG263780Ld02P081E02P081E081F1_096.ab1     1 
Contig length: old 601, new 601