No. words: 1735; after pruning: 1709


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.8 (1,1:757)  753  0.00 0.00 0.13  BG274485Ld05P027B04P027B101F1_004.ab1        1   758 (85)  C BG274485Ld05P027B04P027B101R1_004.ab1   (135)   757     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  378 nodes

 191 str. conn. components

Path
    1  C BG274485Ld05P027B04P027B101R1_004.ab1   892 
  159    BG274485Ld05P027B04P027B101F1_004.ab1    24 
  163  C BG274485Ld05P027B04P027B101R1_004.ab1   730 
  167    BG274485Ld05P027B04P027B101F1_004.ab1    32 
  199  C BG274485Ld05P027B04P027B101R1_004.ab1   694 
  211    BG274485Ld05P027B04P027B101F1_004.ab1    76 
  215  C BG274485Ld05P027B04P027B101R1_004.ab1   678 
  227    BG274485Ld05P027B04P027B101F1_004.ab1    92 
  239  C BG274485Ld05P027B04P027B101R1_004.ab1   654 
  783    BG274485Ld05P027B04P027B101F1_004.ab1   648 
  807  C BG274485Ld05P027B04P027B101R1_004.ab1    86 
  879    BG274485Ld05P027B04P027B101F1_004.ab1   744 
Contig length: old 977, new 978

Contig length: old 978, new 978
New start: 0