No. words: 1169; after pruning: 1143


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.9 (1,1:707)  269  0.36 0.00 0.00  BG274556Ld08P027C04P027C101F1_006.ab1        1   279 (0)  C BG274556Ld08P027C04P027C101R1_006.ab1   (182)   708   430 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  140 nodes

 72 str. conn. components

Path
    1  C BG274556Ld08P027C04P027C101R1_006.ab1   890 
  190    BG274556Ld08P027C04P027C101F1_006.ab1     8 
  194  C BG274556Ld08P027C04P027C101R1_006.ab1   697 
  242    BG274556Ld08P027C04P027C101F1_006.ab1    60 
  258  C BG274556Ld08P027C04P027C101R1_006.ab1   633 
  298    BG274556Ld08P027C04P027C101F1_006.ab1   116 
  302  C BG274556Ld08P027C04P027C101R1_006.ab1   589 
Contig length: old 890, new 890

Contig length: old 890, new 890
New start: 0