No. words: 1055; after pruning: 1029


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 7.1 (1,1:364)  359  0.00 0.28 0.00  BG275108Ld05P027E04P027E101F1_028.ab1        1   363 (183)  C BG275108Ld05P027E04P027E101R1_028.ab1   (143)   366     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  178 nodes

 91 str. conn. components

Path
    1  C BG275108Ld05P027E04P027E101R1_028.ab1   509 
  173    BG275108Ld05P027E04P027E101F1_028.ab1    29 
  177  C BG275108Ld05P027E04P027E101R1_028.ab1   333 
  349    BG275108Ld05P027E04P027E101F1_028.ab1   205 
  373  C BG275108Ld05P027E04P027E101R1_028.ab1   137 
  413    BG275108Ld05P027E04P027E101F1_028.ab1   269 
  449  C BG275108Ld05P027E04P027E101R1_028.ab1    61 
  457    BG275108Ld05P027E04P027E101F1_028.ab1   313 
Contig length: old 690, new 690

Contig length: old 690, new 690
New start: 0