No. words: 943; after pruning: 917


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.7 (1,1:300)  296  0.00 0.00 0.00  BG313611Ld04P078F06P078F121F1_094.ab1        1   301 (154)  C BG313611Ld04P078F06P078F121R1_094.ab1   (187)   301     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  150 nodes

 77 str. conn. components

Path
    1  C BG313611Ld04P078F06P078F121R1_094.ab1   488 
  371    BG313611Ld04P078F06P078F121F1_094.ab1   184 
  387  C BG313611Ld04P078F06P078F121R1_094.ab1   102 
  391    BG313611Ld04P078F06P078F121F1_094.ab1   204 
  399  C BG313611Ld04P078F06P078F121R1_094.ab1    90 
  403    BG313611Ld04P078F06P078F121F1_094.ab1   216 
Contig length: old 642, new 642

Contig length: old 642, new 642
New start: 0