No. words: 944; after pruning: 918


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 4.8 (1,1:305)  285  0.00 0.33 0.66  BG313611Ld07P078F06P078F121F1_088.ab1        2   306 (145)  C BG313611Ld07P078F06P078F121R1_088.ab1   (188)   305     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  144 nodes

 74 str. conn. components

Path
    1  C BG313611Ld07P078F06P078F121R1_088.ab1   493 
  268    BG313611Ld07P078F06P078F121F1_088.ab1    80 
  276  C BG313611Ld07P078F06P078F121R1_088.ab1   218 
  380    BG313611Ld07P078F06P078F121F1_088.ab1   192 
  396  C BG313611Ld07P078F06P078F121R1_088.ab1    98 
  404    BG313611Ld07P078F06P078F121F1_088.ab1   216 
Contig length: old 638, new 639

Contig length: old 639, new 639
New start: 0