No. words: 1186; after pruning: 1146


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 10.0 (1,1:566)  549  0.18 0.18 0.00  BG313722Sn32P059E08P078H121F1_018.ab1        6   567 (34)  C BG313722Sn32P059E08P078H121R1_018.ab1   (22)   563     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C BG313722Sn32P059E08P078H121R1_018.ab1   585 
   57    BG313722Sn32P059E08P078H121F1_018.ab1    39 
   69  C BG313722Sn32P059E08P078H121R1_018.ab1   517 
   73    BG313722Sn32P059E08P078H121F1_018.ab1    55 
  112  C BG313722Sn32P059E08P078H121R1_018.ab1   474 
  124    BG313722Sn32P059E08P078H121F1_018.ab1   106 
  180  C BG313722Sn32P059E08P078H121R1_018.ab1   406 
  444    BG313722Sn32P059E08P078H121F1_018.ab1   426 
  504  C BG313722Sn32P059E08P078H121R1_018.ab1    82 
  520    BG313722Sn32P059E08P078H121F1_018.ab1   502 
  524  C BG313722Sn32P059E08P078H121R1_018.ab1    62 
  556    BG313722Sn32P059E08P078H121F1_018.ab1   538 
Contig length: old 619, new 619

Contig length: old 619, new 619
New start: 0