No. words: 1182; after pruning: 1142


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.8 (1,1:562)  549  0.36 0.18 0.00  BG313722Ta23P059E08P078H121F1_025.ab1        1   563 (32)  C BG313722Ta23P059E08P078H121R1_025.ab1   (23)   564     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1  C BG313722Ta23P059E08P078H121R1_025.ab1   587 
   57    BG313722Ta23P059E08P078H121F1_025.ab1    33 
   65  C BG313722Ta23P059E08P078H121R1_025.ab1   523 
   88    BG313722Ta23P059E08P078H121F1_025.ab1    64 
  112  C BG313722Ta23P059E08P078H121R1_025.ab1   476 
  124    BG313722Ta23P059E08P078H121F1_025.ab1   100 
  184  C BG313722Ta23P059E08P078H121R1_025.ab1   404 
  476    BG313722Ta23P059E08P078H121F1_025.ab1   452 
  488  C BG313722Ta23P059E08P078H121R1_025.ab1   100 
  492    BG313722Ta23P059E08P078H121F1_025.ab1   468 
  500  C BG313722Ta23P059E08P078H121R1_025.ab1    88 
  520    BG313722Ta23P059E08P078H121F1_025.ab1   496 
  524  C BG313722Ta23P059E08P078H121R1_025.ab1    64 
  532    BG313722Ta23P059E08P078H121F1_025.ab1   508 
  544  C BG313722Ta23P059E08P078H121R1_025.ab1    44 
  556    BG313722Ta23P059E08P078H121F1_025.ab1   532 
  564  C BG313722Ta23P059E08P078H121R1_025.ab1    24 
  568    BG313722Ta23P059E08P078H121F1_025.ab1   544 
Contig length: old 619, new 619

Contig length: old 619, new 619
New start: 0 
S Change at: 84; seg lengths: entry 1, contig 1