No. words: 1211; after pruning: 1185


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.0 (1,1:445)  434  0.00 0.22 0.00  BG604453Ld04P027G04P027G101F1_017.ab1        1   445 (152)  C BG604453Ld04P027G04P027G101R1_017.ab1   (167)   447     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C BG604453Ld04P027G04P027G101R1_017.ab1   614 
  511    BG604453Ld04P027G04P027G101F1_017.ab1   343 
  551  C BG604453Ld04P027G04P027G101R1_017.ab1    64 
  559    BG604453Ld04P027G04P027G101F1_017.ab1   391 
Contig length: old 765, new 765

Contig length: old 765, new 765
New start: 0