No. words: 294; after pruning: 268


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.8 -0.8 (1,1:95)   77  1.04 1.04 2.08  BG604453Sn32P059G08P027G101F1_050.ab1        1    96 (52)  C BG604453Sn32P059G08P027G101R1_050.ab1   (50)    96     2 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.8       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  38 nodes

 21 str. conn. components

Path
    1  C BG604453Sn32P059G08P027G101R1_050.ab1   146 
   54    BG604453Sn32P059G08P027G101F1_050.ab1     4 
   58  C BG604453Sn32P059G08P027G101R1_050.ab1    89 
   62    BG604453Sn32P059G08P027G101F1_050.ab1    12 
   70  C BG604453Sn32P059G08P027G101R1_050.ab1    77 
   82    BG604453Sn32P059G08P027G101F1_050.ab1    31 
   90  C BG604453Sn32P059G08P027G101R1_050.ab1    57 
  106    BG604453Sn32P059G08P027G101F1_050.ab1    55 
Contig length: old 198, new 199

Contig length: old 199, new 199
New start: 0 
S Change at: 117; seg lengths: entry 1, contig 1