No. words: 1338; after pruning: 1312


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.2 (1,1:507)  493  0.00 0.00 0.20  BG604577Ld04P027A05P027A111F1_042.ab1        2   508 (182)  C BG604577Ld04P027A05P027A111R1_042.ab1   (142)   506     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C BG604577Ld04P027A05P027A111R1_042.ab1   648 
  282    BG604577Ld04P027A05P027A111F1_042.ab1   141 
  354  C BG604577Ld04P027A05P027A111R1_042.ab1   295 
  510    BG604577Ld04P027A05P027A111F1_042.ab1   369 
Contig length: old 830, new 831

Contig length: old 831, new 831
New start: 0